trim seqs
Once thats done will run QC report prior to Assembly.
Redo with changing limit to 20
baffled with the filter on Length -
---
Not going to trim on length -
trim v4
QC report
PRE trim report for CC
Post trim report CC and CE
De novo assembly (v4)
look at trim reads with 20bp cut-off; (trim v3)
v3 trimmed reads
bringing into iPlant
also do an assembly using this data
fast assembly
100bp min
@ 200 -> 1700 sequences
-- did slow assembly
Experiment
